← Epidemiological Modelling

Vaccination

Vaccination is included in an epidemic model by changing the way individuals move between compartments or by changing their risk of infection, infectiousness, or disease progression. The exact mathematical form depends on what biological effect the vaccine is intended to represent.

Key modelling question. What does vaccination do in the biological system being studied: prevent infection completely, reduce susceptibility, reduce onward transmission, reduce severe disease, or provide temporary protection?

A simple vaccination model

Suppose susceptible individuals are vaccinated at per-capita rate \(\nu\). We introduce a vaccinated compartment \(V(t)\).

SusceptibleS(t)VaccinatedV(t)vaccinationνS

The total vaccination flow is \(\nu S\). It contributes \(-\nu S\) to the susceptible equation and \(+\nu S\) to the vaccinated equation.

Different ways to model vaccination

There is no single universal vaccination model. The compartment structure changes according to the biological effect being represented.

1. Perfect-protection model

Vaccination gives complete protection during the modelled period.

SusceptibleS(t)VaccinatedV(t): fully protectedvaccinationνS

Vaccinated individuals no longer contribute to the susceptible pool. This is useful for understanding the basic population-level effect of vaccination, but it is an idealisation.

2. Leaky vaccine model

A leaky vaccine reduces each vaccinated person's susceptibility but does not eliminate it.

SusceptibleS(t)VaccinatedV(t)InfectiousI_V(t)vaccinationbreakthrough infection(1−eₛ)βVI/N

Let \(e_s\) be efficacy against infection. Breakthrough infections occur at rate

\[\boxed{(1-e_s)\beta\frac{VI}{N}}.\]

For example, \(e_s=0.8\) leaves 20% of the original susceptibility.

3. All-or-nothing model

Vaccination completely protects some recipients but does not protect the remainder.

Vaccinated recipientsSFully protectedV_PStill susceptibleS_Vprotected fractionunprotected fraction
Leaky versus all-or-nothing. With 80% efficacy, a leaky model can represent everyone receiving an 80% reduction in susceptibility, whereas an all-or-nothing model can represent 80% becoming fully protected and 20% receiving no protection against infection.

4. Waning-immunity model

If vaccine protection is temporary, vaccinated individuals eventually return to susceptibility.

SusceptibleS(t)VaccinatedV(t)vaccination: νSwaning protection: ωᵥV

Under a constant waning rate, the mean duration of protection is \(1/\omega_V\).

5. Vaccination in SIR and SEIR models

Vaccination can be added to an existing compartmental epidemic model.

SusceptibleS(t)InfectiousI(t)RecoveredR(t)VaccinatedV(t)infectionrecoveryvaccination

For an SEIR model, an exposed compartment is inserted between susceptible and infectious: \(S\to E\to I\to R\), while vaccination provides an additional flow from \(S\) to \(V\). The vaccinated class may be fully protected or may still experience breakthrough infection.

6. Vaccines that reduce infectiousness

A vaccine may allow breakthrough infection but reduce onward transmission.

SusceptibleSInfectiousI_UVaccinatedVBreakthrough infectiousI_Vinfectionbreakthrough infectionreduced onward transmission

A simple force of infection is

\[\lambda=\beta\frac{I_U+(1-e_i)I_V}{N},\]

where \(e_i\) represents efficacy against infectiousness.

7. Vaccines that reduce severe disease

When hospitalisation or severe illness is the outcome of interest, vaccinated and unvaccinated infections can have different progression rates.

Unvaccinated infectiousI_USevere / hospitalisedHBreakthrough infectiousI_Vhigher progressionreduced progression

This structure allows vaccination to strongly reduce severe outcomes even when protection against infection is incomplete.

ModelMain assumption
Perfect protectionVaccinated individuals cannot become infected during the modelled period.
LeakyEach vaccinated individual has reduced susceptibility.
All-or-nothingSome recipients are fully protected; others are not protected.
Waning immunityProtection decreases and individuals return to susceptibility.
Reduced infectiousnessBreakthrough infections transmit less efficiently.
Reduced severityVaccination reduces progression to severe outcomes.

How vaccination changes epidemic growth

In the simplest SIR setting, suppose a fraction \(p\) of the population is fully protected before an outbreak. Then

\[\frac{S(0)}{N}=1-p,\]

and

\[\boxed{R_{\mathrm{eff}}(0)=R_0(1-p)}.\]

To prevent initial epidemic growth in this idealised model,

\[R_0(1-p)<1,\]

giving

\[\boxed{p_c=1-\frac{1}{R_0}}.\]
Example. If \(R_0=4\), then \(p_c=0.75\). Under the ideal assumptions, more than 75% must be completely protected to make \(R_{\mathrm{eff}}(0)<1\).

Which vaccination model should be used?

The simplest model that captures the biological mechanism relevant to the question is usually preferable. Infection prevention requires susceptibility to be represented; hospital-demand questions require severe-disease progression; waning requires a return flow; and altered breakthrough transmission may require separate infectious classes.

These structures are not separate inventions belonging to a single person. They are extensions of compartmental epidemic modelling developed for different biological assumptions, so attaching one inventor to the general vaccination-model framework would be misleading.

Key idea. “Vaccination” is not one mathematical mechanism. A vaccination model should state precisely which effect is being represented and translate that effect into compartments and transition rates.